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Study

Study Name: Expanding fungal reference genomes with early diverging lineages (EDL) of fungi

Projects

Biosamples

Organisms

Biosamples: 8 Seq. Projects: 1842
STUDY INFORMATION
GOLD Study ID Gs0118514
Study Name Expanding fungal reference genomes with early diverging lineages (EDL) of fungi
Other Names
NCBI Umbrella Bioproject Name
NCBI Umbrella Bioproject ID
SRA Studies
SRA Study Id SRP219546  (Link to NCBI )
Study Title Dichotomocladium robustum RSA 2353+ Standard Draft genome sequencing
Study Abstract
  
SRA Study Id SRP183789  (Link to NCBI )
Study Title Geranomyces variabilis JEL559 Transcriptome - JEL559R
Study Abstract
  
SRA Study Id SRP183785  (Link to NCBI )
Study Title Mucor mucedo Fresen. NRRL 3635 Standard Draft genome sequencing
Study Abstract
  
SRA Study Id SRP135620  (Link to NCBI )
Study Title Umbelopsis isabellina AD026 Standard Draft genome sequencing
Study Abstract
  
SRA Study Id SRP152400  (Link to NCBI )
Study Title Halteromyces radiatus CBS 162.75 T Transcriptome - HalradRNA
Study Abstract
  
SRA Study Id SRP183787  (Link to NCBI )
Study Title Fimicolochytrium jonesii JEL569 Standard Draft genome sequencing
Study Abstract
  
SRA Study Id SRP145143  (Link to NCBI )
Study Title Cladochytrium polystomum WB228 Standard Draft genome sequencing
Study Abstract
  
SRA Study Id SRP293003  (Link to NCBI )
Study Title Lunasporangiospora selenospora KOD 1015 Transcriptome - KOD 1015
Study Abstract
  
SRA Study Id SRP293004  (Link to NCBI )
Study Title Lentamyces zychae NRRL 2806 Transcriptome - Lenzyc02
Study Abstract
  
SRA Study Id SRP293007  (Link to NCBI )
Study Title Lentamyces zychae NRRL 2806 Standard Draft genome sequencing
Study Abstract
  
SRA Study Id SRP293009  (Link to NCBI )
Study Title Lentamyces parricida NRRL 2409 Transcriptome - Lenpar01
Study Abstract
  
SRA Study Id SRP157807  (Link to NCBI )
Study Title Mixed culture fungal communities from London, United Kingdom - Umbelopsis sp. nov. AD052 Piptocephalis tieghemiana RSA 1565 Co-culture metagenome
Study Abstract
  
SRA Study Id SRP183792  (Link to NCBI )
Study Title Mucor mucedo Fresen. NRRL 3635 Transcriptome - Mmucedo3636
Study Abstract
  
SRA Study Id SRP145151  (Link to NCBI )
Study Title Cladochytrium polystomum WB228 Transcriptome - WB228R
Study Abstract
  
SRA Study Id SRP097499  (Link to NCBI )
Study Title Entophlyctis helioformis JEL805 Standard Draft genome sequencing
Study Abstract
  
SRA Study Id SRP118467  (Link to NCBI )
Study Title Coemansia spiralis RSA 1278 Transcriptome
Study Abstract
  
SRA Study Id SRP118500  (Link to NCBI )
Study Title Entophlyctis helioformis JEL805 Transcriptome
Study Abstract
  
SRA Study Id SRP137583  (Link to NCBI )
Study Title Kirkomyces cordense RSA 1222 T transcriptome
Study Abstract
  
SRA Study Id SRP137464  (Link to NCBI )
Study Title Umbelopsis sp.1 AD052 transcriptome
Study Abstract
  
SRA Study Id SRP153313  (Link to NCBI )
Study Title Powellomyces hirtus BR81 Transcriptome - BR81R
Study Abstract
  
SRA Study Id SRP289751  (Link to NCBI )
Study Title Modicella sp 153P Transcriptome - 153P RNA
Study Abstract
  
SRA Study Id SRP153312  (Link to NCBI )
Study Title Triparticalcar arcticum BR59 Standard Draft genome sequencing
Study Abstract
  
SRA Study Id SRP137466  (Link to NCBI )
Study Title Zychaea mexicana RSA 1403 T transcriptome
Study Abstract
  
SRA Study Id SRP118507  (Link to NCBI )
Study Title Kickxella alabastrina RSA 675 Transcriptome
Study Abstract
  
SRA Study Id SRP137467  (Link to NCBI )
Study Title Sporodiniella umbellata MES-1446 transcriptome - SpoumbRNA
Study Abstract
  
SRA Study Id SRP137468  (Link to NCBI )
Study Title Umbelopsis isabellina AD026 transcriptome - Umbisa01_RNA
Study Abstract
  
SRA Study Id SRP137469  (Link to NCBI )
Study Title Benjaminiella poitrasii RSA 903 transcriptome - RSA903RNA
Study Abstract
  
SRA Study Id SRP110345  (Link to NCBI )
Study Title Kickxella alabastrina RSA 675 Standard Draft genome sequencing
Study Abstract
  
SRA Study Id SRP110344  (Link to NCBI )
Study Title Chytridium lagenaria Arg66 Standard Draft genome sequencing
Study Abstract
  
SRA Study Id SRP153319  (Link to NCBI )
Study Title Triparticalcar arcticum BR59 Transcriptome - BR59R
Study Abstract
  
SRA Study Id SRP118504  (Link to NCBI )
Study Title Chlamydoabsidia padenii NRRL 2977 T Transcriptome
Study Abstract
  
SRA Study Id SRP137470  (Link to NCBI )
Study Title Paraphysoderma sedebokerense JEL821 transcriptome - JEL821_RNA
Study Abstract
  
SRA Study Id SRP170556  (Link to NCBI )
Study Title Helicostylum pulchrum RSA 2064 Transcriptome
Study Abstract
  
SRA Study Id SRP170554  (Link to NCBI )
Study Title Helicostylum pulchrum RSA 2064 Standard Draft genome sequencing
Study Abstract
  
SRA Study Id SRP123760  (Link to NCBI )
Study Title Dichotomocladium elegans RSA 919- - DeleRSA919RNA
Study Abstract
  
SRA Study Id SRP123763  (Link to NCBI )
Study Title Phycomyces nitens S608 Transcriptome - PN8R
Study Abstract
  
SRA Study Id SRP123764  (Link to NCBI )
Study Title Phycomyces nitens S607 Transcriptome - PN7R
Study Abstract
  
SRA Study Id SRP123765  (Link to NCBI )
Study Title Mortierella multidivaricata RSA 2152 Transcriptome
Study Abstract
  
SRA Study Id SRP123766  (Link to NCBI )
Study Title Phycomyces nitens S609 Transcriptome - PN9R
Study Abstract
  
SRA Study Id SRP234225  (Link to NCBI )
Study Title Basidiobolus microsporus NRRL 2992 Transcriptome - NRRL2992_RNA
Study Abstract
  
SRA Study Id SRP110338  (Link to NCBI )
Study Title Cokeromyces recurvatus NRRL 2243 Standard Draft genome sequencing
Study Abstract
  
SRA Study Id SRP110337  (Link to NCBI )
Study Title Pilaira anomala RSA1997 Standard Draft genome sequencing
Study Abstract
  
SRA Study Id SRP145130  (Link to NCBI )
Study Title Coemansia mojavensis RSA 71 Standard Draft genome sequencing
Study Abstract
  
SRA Study Id SRP153306  (Link to NCBI )
Study Title Hyaloraphidium curvatum SAG235-1 Standard Draft genome sequencing
Study Abstract
  
SRA Study Id SRP110332  (Link to NCBI )
Study Title Coemansia spiralis RSA 1278 Standard Draft genome sequencing
Study Abstract
  
SRA Study Id SRP145131  (Link to NCBI )
Study Title Coemansia mojavensis RSA 71 Transcriptome - CoemojRNA
Study Abstract
  
SRA Study Id SRP110334  (Link to NCBI )
Study Title Fennellomyces sp. T-0311 Standard Draft
Study Abstract
  
SRA Study Id SRP110333  (Link to NCBI )
Study Title Gilbertella persicaria var. persicaria CBS 190.32 Standard Draft genome sequencing
Study Abstract
  
SRA Study Id SRP153309  (Link to NCBI )
Study Title Hyaloraphidium curvatum SAG235-1 Transcriptome - JEL383R
Study Abstract
  
SRA Study Id SRP153308  (Link to NCBI )
Study Title Powellomyces hirtus BR81 Standard Draft genome sequencing
Study Abstract
  
SRA Study Id SRP118488  (Link to NCBI )
Study Title Phycomyces nitens S608 Standard Draft genome sequencing
Study Abstract
  
SRA Study Id SRP118487  (Link to NCBI )
Study Title Cokeromyces recurvatus NRRL 2243 Transcriptome
Study Abstract
  
SRA Study Id SRP118489  (Link to NCBI )
Study Title Phycomyces nitens S609 Standard Draft genome sequencing
Study Abstract
  
SRA Study Id SRP118484  (Link to NCBI )
Study Title Gongronella butleri CBS 227.36+ Transcriptome
Study Abstract
  
SRA Study Id SRP118486  (Link to NCBI )
Study Title Phascolomyces articulosus RSA 2281 Transcriptome
Study Abstract
  
SRA Study Id SRP183617  (Link to NCBI )
Study Title Amylomyces rouxii NRRL 5866 Transcriptome - 5866-RNA
Study Abstract
  
SRA Study Id SRP256647  (Link to NCBI )
Study Title Mortierella ambigua NRRL 28271 Transcriptome - NRRL 28271
Study Abstract
  
SRA Study Id SRP256646  (Link to NCBI )
Study Title Mortierella ambigua NRRL 28271 Standard Draft genome sequencing
Study Abstract
  
SRA Study Id SRP096532  (Link to NCBI )
Study Title Chlamydoabsidia padenii NRRL 2977 Standard Draft genome sequencing
Study Abstract
  
SRA Study Id SRP096533  (Link to NCBI )
Study Title Blastocladiella britannica JEL711 Standard Draft genome sequencing
Study Abstract
  
SRA Study Id SRP096535  (Link to NCBI )
Study Title Globomyces pollinis-pini Arg68 Standard Draft genome sequencing
Study Abstract
  
SRA Study Id SRP280361  (Link to NCBI )
Study Title Absidia caerulea NRRL 1315 Standard Draft genome sequencing
Study Abstract
  
SRA Study Id SRP280366  (Link to NCBI )
Study Title Absidia caerulea NRRL 1315 Transcriptome - Abscae02
Study Abstract
  
SRA Study Id SRP280369  (Link to NCBI )
Study Title Mycotypha indica IMI 211999 Standard Draft genome sequencing
Study Abstract
  
SRA Study Id SRP225332  (Link to NCBI )
Study Title Rhizopus stolonifer NRRL 66455 Transcriptome - RstolNRRL66455RNA
Study Abstract
  
SRA Study Id SRP118476  (Link to NCBI )
Study Title Gilbertella persicaria var. persicaria CBS 190.32- Transcriptome
Study Abstract
  
SRA Study Id SRP114272  (Link to NCBI )
Study Title Phycomyces nitens S607 Standard Draft genome sequencing
Study Abstract
  
SRA Study Id SRP225331  (Link to NCBI )
Study Title Ellisomyces anomalus CBS 243.57 Transcriptome - CBS243_57-RNA
Study Abstract
  
SRA Study Id SRP171623  (Link to NCBI )
Study Title Gorgonomyces haynaldii MP57 Transcriptome - MP57R
Study Abstract
  
SRA Study Id SRP114270  (Link to NCBI )
Study Title Dichotomocladium elegans RSA 919- Standard Draft genome sequencing
Study Abstract
  
SRA Study Id SRP118472  (Link to NCBI )
Study Title Fennellomyces sp. T-0311 Transcriptome or Gene expression
Study Abstract
  
SRA Study Id SRP118475  (Link to NCBI )
Study Title Pilaira anomala RSA1997 Transcriptome
Study Abstract
  
SRA Study Id SRP170251  (Link to NCBI )
Study Title Blakeslea trispora F986 Transcriptome - F986R
Study Abstract
  
SRA Study Id SRP096518  (Link to NCBI )
Study Title Chytriomyces sp. nov. MP71 Standard Draft genome sequencing
Study Abstract
  
SRA Study Id SRP159344  (Link to NCBI )
Study Title Blakeslea trispora F921 Standard Draft genome sequencing
Study Abstract
  
SRA Study Id SRP170253  (Link to NCBI )
Study Title Choanephora cucurbitarum NRRL 2744 Transcriptome - CcurRSA2744RNA
Study Abstract
  
SRA Study Id SRP231330  (Link to NCBI )
Study Title Jimgerdemannia flammicorona GMNB39 Transcriptome
Study Abstract
  
SRA Study Id SRP170252  (Link to NCBI )
Study Title Dissophora ornata CBS 347.77 Minimal Draft genome sequencing
Study Abstract
  
SRA Study Id SRP293205  (Link to NCBI )
Study Title Lunasporangiospora selenospora KOD 1015 Standard Draft genome sequencing
Study Abstract
  
SRA Study Id SRP231334  (Link to NCBI )
Study Title Mortierella echinosphaera CBS 575.75 Standard Draft genome sequencing
Study Abstract
  
SRA Study Id SRP152394  (Link to NCBI )
Study Title Halteromyces radiatus CBS 162.75 Standard Draft genome sequencing
Study Abstract
  
SRA Study Id SRP159345  (Link to NCBI )
Study Title Blakeslea trispora F986 Standard Draft genome sequencing
Study Abstract
  
SRA Study Id SRP280374  (Link to NCBI )
Study Title Mycotypha indica IMI 211999 Transcriptome - Mycind
Study Abstract
  
SRA Study Id SRP280375  (Link to NCBI )
Study Title Fennellomyces linderi CBS 158.54 Standard Draft genome sequencing
Study Abstract
  
SRA Study Id SRP280377  (Link to NCBI )
Study Title Fennellomyces linderi CBS 158.54 Transcriptome - Fenlin
Study Abstract
  
SRA Study Id SRP171617  (Link to NCBI )
Study Title Gorgonomyces haynaldii MP57 Standard Draft genome sequencing
Study Abstract
  
SRA Study Id SRP097057  (Link to NCBI )
Study Title Gaertneriomyces semiglobifer Barr 43 Standard Draft genome sequencing
Study Abstract
  
SRA Study Id SRP231328  (Link to NCBI )
Study Title Endogone sp. FLAS-F59071 Transcriptome
Study Abstract
  
SRA Study Id SRP194535  (Link to NCBI )
Study Title Phycomyces blakesleeanus UBC1 Standard Draft genome sequencing
Study Abstract
  
SRA Study Id SRP194536  (Link to NCBI )
Study Title Phycomyces blakesleeanus UBC1 Transcriptome - PB1R
Study Abstract
  
SRA Study Id SRP170247  (Link to NCBI )
Study Title Choanephora cucurbitarum NRRL 2744 Standard Draft genome sequencing
Study Abstract
  
SRA Study Id SRP256706  (Link to NCBI )
Study Title Mortierella wolfii NRRL 6351 Standard Draft genome sequencing
Study Abstract
  
SRA Study Id SRP231327  (Link to NCBI )
Study Title Jimgerdemannia flammicorona AD002 Transcriptome
Study Abstract
  
SRA Study Id SRP170249  (Link to NCBI )
Study Title Dissophora ornata CBS 347.77 Transcriptome - Dissorn01_RNA
Study Abstract
  
SRA Study Id SRP256708  (Link to NCBI )
Study Title Mortierella wolfii NRRL 6361 Transcriptome - NRRL 6361
Study Abstract
  
SRA Study Id SRP293010  (Link to NCBI )
Study Title Lentamyces parricida NRRL 2409 Standard Draft genome sequencing
Study Abstract
  
SRA Study Id SRP231325  (Link to NCBI )
Study Title Dichotomocladium robustum RSA 2353+ Transcriptome - DrobRSA2353
Study Abstract
  
SRA Study Id SRP128220  (Link to NCBI )
Study Title Zychaea mexicana RSA 1403 Standard Draft genome sequencing
Study Abstract
  
SRA Study Id SRP096515  (Link to NCBI )
Study Title Phascolomyces articulosus RSA 2281 Standard Draft genome sequencing
Study Abstract
  
SRA Study Id SRP096516  (Link to NCBI )
Study Title Gongronella butleri CBS 227.36+ Standard Draft genome sequencing
Study Abstract
  
SRA Study Id SRP096517  (Link to NCBI )
Study Title Gamsiella multidivaricata RSA 2152 Standard Draft genome sequencing
Study Abstract
  
SRA Study Id SRP225329  (Link to NCBI )
Study Title Lobulomyces angularis JEL45 Transcriptome - JEL45R
Study Abstract
  
SRA Study Id SRP118499  (Link to NCBI )
Study Title Blastocladiella britannica JEL711 Transcriptome
Study Abstract
  
SRA Study Id SRP118498  (Link to NCBI )
Study Title Globomyces pollinis-pini Arg68 Transcriptome
Study Abstract
  
SRA Study Id SRP118497  (Link to NCBI )
Study Title Chytridium lagenaria Arg66 Transcriptome
Study Abstract
  
SRA Study Id SRP128218  (Link to NCBI )
Study Title Kirkomyces cordense RSA 1222 Standard Draft genome sequencing
Study Abstract
  
SRA Study Id SRP128217  (Link to NCBI )
Study Title Sporodiniella umbellata MES-1446 Standard Draft genome sequencing
Study Abstract
  
SRA Study Id SRP118493  (Link to NCBI )
Study Title Chytriomyces sp. MP71 Transcriptome or Gene expression
Study Abstract
  
SRA Study Id SRP118492  (Link to NCBI )
Study Title Gaertneriomyces semiglobifer Barr 43 Transcriptome
Study Abstract
  
SRA Study Id SRP128215  (Link to NCBI )
Study Title Paraphysoderma sedebokerense JEL821 Standard Draft genome sequencing
Study Abstract
  
SRA Study Id SRP128214  (Link to NCBI )
Study Title Umbelopsis sp. AD052 Standard Draft genome sequencing
Study Abstract
  
Legacy ER Study ID
Legacy GOLD ID
Added By JGI automated process on 2016-03-25
Last Modified By JGI automated process on 2019-06-18
PI Joseph Spatafora
Description Genomics and transcriptomics of the early diverging lineages (EDL) of fungi and their transition to terrestrial, plant-based ecologies
Relevance
Study Information Link
Study Information Visibility Public
Metagenomic Study Yes
Publication
Is GEBA
Is HMP
ECOSYSTEM CLASSIFICATION
Ecosystem Host-associated
Ecosystem Category Fungi
Ecosystem Type Unclassified
Ecosystem Subtype Unclassified
Specific Ecosystem Unclassified
STUDY COMPOSITION
Number of Biosamples 8
Number of Organisms 1744
Number of Seq Projects 1842
Number of Analysis Projects 28
Number of Related Studies 0

 

 

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