PROJECT INFORMATION
GOLD Project ID
Gp0344142  
Project Name
Metatranscriptome of Pisolithus microcarpus R10 extramatrical mycelium from Australia - C_use_EMM_R10_ng3  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Metatranscriptome of Pisolithus microcarpus R10 extramatrical mycelium from Australia - C_use_EMM_R10_ng3
NCBI BioProject ID 570251
NCBI BioProject Accession PRJNA570251
NCBI Locus Tag
F5T82  
NCBI BioSample Accession SAMN12812732
PI Jonathan Plett
Added By JGI automated process on 2018-10-19
Last Modified By JGI automated process on 2020-04-04
Project Comments
  
Project Status
incomplete  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Metatranscriptome of Pisolithus microcarpus R10 extramatrical mycelium from Australia; pure culture in contact with E. grandis host, grown on medium with normal glucose level  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid RNA
Sequencing Strategy
Metatranscriptome  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Genome sequencing of an ecologically diverse suite of ectomycorrhizal fungi within genus Pisolithus
Biosample Pisolithus microcarpus R10 extramatrical mycelium from Australia - C_use_EMM_R10_ng3
Analysis Projects
  
Number of Analysis Projects (AP)
0  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Contamination Screening Input
  
DNA Amplification Method
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2500-1TB
Library Method (MIGS-28)
Illumina RNASeq w/PolyA Selection, Plates  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Pisolithus microcarpus R10 extramatrical mycelium from Australia - C_use_EMM_R10_ng3
Other Names (alias, synonyms, short names)
  
Sample Description
Pisolithus microcarpus R10 extramatrical mycelium from Australia; pure culture in contact with E. grandis host, grown on medium with normal glucose level  
SAMPLE TAXONOMY
NCBI Taxonomy ID 1670606
GOLD CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Fungi  
Ecosystem Type
Mycelium  
Ecosystem Subtype
  
Specific Ecosystem
  

 

 

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