PROJECT INFORMATION
GOLD Project ID
Gp0247961  
Project Name
Leiotrametes menziesii CIRM-BRFM 1781 Transcriptome - 1781_oct14_AVI3  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Leiotrametes menziesii CIRM-BRFM 1781 transcriptome - 1781_oct14_AVI3
NCBI BioProject ID 442225
NCBI BioProject Accession PRJNA442225
NCBI Locus Tag
  
NCBI BioSample Accession SAMN08779824
PI Eric Record
Added By JGI automated process on 2017-09-29
Last Modified By JGI automated process on 2019-06-18
Project Comments
  
Project Status
incomplete  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Leiotrametes menziesii CIRM-BRFM 1781 Transcriptome; liquid culture on Avicel  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid RNA
Sequencing Strategy
Transcriptome  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX3902289  (Link to NCBI )
Experiment Title Trametes menziesii CIRM-BRFM 1781 Transcriptome
Exp Library Strategy RNA_SEQ
Library Source TRANSCRIPTOMIC
Library Selection RT-PCR
Library Name BPZAC
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2500
 
SRA Experiment Id SRX3902290  (Link to NCBI )
Experiment Title Trametes menziesii CIRM-BRFM 1781 Transcriptome
Exp Library Strategy RNA_SEQ
Library Source TRANSCRIPTOMIC
Library Selection RT-PCR
Library Name BPZAC
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2500
PROJECT COMPOSITION
Study Survey of lignocellulolytic capabilities over the order Polyporales
Organism Leiotrametes menziesii CIRM-BRFM 1781
Analysis Projects
  
Number of Analysis Projects (AP)
0  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Contamination Screening Input
  
DNA Amplification Method
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2500-1TB
Library Method (MIGS-28)
Illumina RNASeq w/PolyA Selection, Tubes  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0367354
Organism Name
Leiotrametes menziesii CIRM-BRFM 1781  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
EUKARYAL  
Phylogeny
FUNGI-BASIDIOMYCOTA  
Genus
Leiotrametes  
Genus Synonyms
  
Species
Leiotrametes menziesii  
Subspecies
  
Species Synonyms
  
Strain
CIRM-BRFM 1781  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
CIRM-BRFM 1781  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 2136021
NCBI Superkingdom
Eukaryota  
NCBI Kingdom
Fungi  
NCBI Phylum
Basidiomycota  
NCBI Class
Agaricomycetes  
NCBI Order
Polyporales  
NCBI Family
Polyporaceae  
NCBI Genus
Leiotrametes  
NCBI Species
Leiotrametes menziesii  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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