PROJECT INFORMATION
GOLD Project ID
Gp0242033  
Project Name
Podila humilis PMI_1414 Transcriptome - PMI1414_RNA  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Podila humilis PMI_1414 Transcriptome - PMI1414_RNA
NCBI BioProject ID 408426
NCBI BioProject Accession PRJNA408426
NCBI Locus Tag
  
NCBI BioSample Accession SAMN07685090
PI Gregory Bonito
Added By JGI automated process on 2017-09-19
Last Modified By Supratim Mukherjee on 2020-11-09
Project Comments
  
Project Status
incomplete  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Podila humilis PMI_1414 Transcriptome  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid RNA
Sequencing Strategy
Transcriptome  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX3362914  (Link to NCBI )
Experiment Title Mortierella humilis PMI_1414 Transcriptome
Exp Library Strategy RNA_SEQ
Library Source TRANSCRIPTOMIC
Library Selection RT-PCR
Library Name AYXXG
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2500
PROJECT COMPOSITION
Study Comparative genomics of early diverging terrestrial fungi and their bacterial endosymbionts
Organism Podila humilis PMI_1414
Analysis Projects
  
Number of Analysis Projects (AP)
0  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Contamination Screening Input
  
DNA Amplification Method
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2500-1TB
Library Method (MIGS-28)
Illumina RNASeq w/PolyA Selection, Tubes  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0324939
Organism Name
Podila humilis PMI_1414  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
EUKARYAL  
Phylogeny
FUNGI-MUCOROMYCOTA  
Genus
Podila  
Genus Synonyms
  
Species
Podila humilis  
Subspecies
  
Species Synonyms
  
Strain
PMI_1414  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
No  
Culture Type
  
Organism Type
Natural  
Uncultured Type
Metagenomic  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 64523
NCBI Superkingdom
Eukaryota  
NCBI Kingdom
Fungi  
NCBI Phylum
Mucoromycota  
NCBI Class
Mortierellomycetes  
NCBI Order
Mortierellales  
NCBI Family
Mortierellaceae  
NCBI Genus
Podila  
NCBI Species
Podila humilis  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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