PROJECT INFORMATION
GOLD Project ID
Gp0236096  
Project Name
Cryptococcus neoformans var. grubii KN99  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Cryptococcus neoformans var. grubii KN99 Genome Sequencing
NCBI BioProject ID 384617
NCBI BioProject Accession PRJNA384617
NCBI Locus Tag
  
NCBI BioSample Accession SAMN06704791
PI
Added By JGI automated process on 2017-08-31
Last Modified By JGI automated process on 2017-09-01
Project Comments
  
Project Status
Complete and Published  
Project Relevance Model Organism
Sequencing Center Washington University in St. Louis (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
Cryptococcus neoformans var. grubii KN99 Genome Sequencing  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX2805050  (Link to NCBI )
Experiment Title Genome sequencing of Cryptococcus neoformans var. grubii KN99: wildtype sample
SRA Submission ID 4040582
Submitter Ryan Zachary Friedman (mblab-admin@cgs.wustl.edu)
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name wt09
Library Layout PAIRED
Library Instrument NextSeq 500
 
SRA Experiment Id SRX2805035  (Link to NCBI )
Experiment Title Genome sequencing of Cryptococcus neoformans var. grubii KN99: wildtype sample
SRA Submission ID 4040567
Submitter Ryan Zachary Friedman (mblab-admin@cgs.wustl.edu)
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name wt16
Library Layout PAIRED
Library Instrument NextSeq 500
 
SRA Experiment Id SRX2805036  (Link to NCBI )
Experiment Title Genome sequencing of Cryptococcus neoformans var. grubii KN99: wildtype sample
SRA Submission ID 4040568
Submitter Ryan Zachary Friedman (mblab-admin@cgs.wustl.edu)
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name wt17
Library Layout PAIRED
Library Instrument NextSeq 500
 
SRA Experiment Id SRX2805033  (Link to NCBI )
Experiment Title Genome sequencing of Cryptococcus neoformans var. grubii KN99: wildtype sample
SRA Submission ID 4040565
Submitter Ryan Zachary Friedman (mblab-admin@cgs.wustl.edu)
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name wt20
Library Layout PAIRED
Library Instrument NextSeq 500
 
SRA Experiment Id SRX2805034  (Link to NCBI )
Experiment Title Genome sequencing of Cryptococcus neoformans var. grubii KN99: wildtype sample
SRA Submission ID 4040566
Submitter Ryan Zachary Friedman (mblab-admin@cgs.wustl.edu)
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name wt15
Library Layout PAIRED
Library Instrument NextSeq 500
 
SRA Experiment Id SRX2805031  (Link to NCBI )
Experiment Title Genome sequencing of Cryptococcus neoformans var. grubii KN99: wildtype sample
SRA Submission ID 4040563
Submitter Ryan Zachary Friedman (mblab-admin@cgs.wustl.edu)
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name wt29
Library Layout PAIRED
Library Instrument NextSeq 500
 
SRA Experiment Id SRX2805032  (Link to NCBI )
Experiment Title Genome sequencing of Cryptococcus neoformans var. grubii KN99: wildtype sample
SRA Submission ID 4040564
Submitter Ryan Zachary Friedman (mblab-admin@cgs.wustl.edu)
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name wt19
Library Layout PAIRED
Library Instrument NextSeq 500
 
SRA Experiment Id SRX2805051  (Link to NCBI )
Experiment Title Genome sequencing of Cryptococcus neoformans var. grubii KN99: wildtype sample
SRA Submission ID 4040583
Submitter Ryan Zachary Friedman (mblab-admin@cgs.wustl.edu)
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name wt10
Library Layout PAIRED
Library Instrument NextSeq 500
 
SRA Experiment Id SRX2805030  (Link to NCBI )
Experiment Title Genome sequencing of Cryptococcus neoformans var. grubii KN99: wildtype sample
SRA Submission ID 4040562
Submitter Ryan Zachary Friedman (mblab-admin@cgs.wustl.edu)
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name wt30
Library Layout PAIRED
Library Instrument NextSeq 500
 
SRA Experiment Id SRX2805039  (Link to NCBI )
Experiment Title Genome sequencing of Cryptococcus neoformans var. grubii KN99: wildtype sample
SRA Submission ID 4040571
Submitter Ryan Zachary Friedman (mblab-admin@cgs.wustl.edu)
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name wt12
Library Layout PAIRED
Library Instrument NextSeq 500
 
SRA Experiment Id SRX2805037  (Link to NCBI )
Experiment Title Genome sequencing of Cryptococcus neoformans var. grubii KN99: wildtype sample
SRA Submission ID 4040569
Submitter Ryan Zachary Friedman (mblab-admin@cgs.wustl.edu)
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name wt18
Library Layout PAIRED
Library Instrument NextSeq 500
 
SRA Experiment Id SRX2805038  (Link to NCBI )
Experiment Title Genome sequencing of Cryptococcus neoformans var. grubii KN99: wildtype sample
SRA Submission ID 4040570
Submitter Ryan Zachary Friedman (mblab-admin@cgs.wustl.edu)
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name wt11
Library Layout PAIRED
Library Instrument NextSeq 500
 
SRA Experiment Id SRX2805024  (Link to NCBI )
Experiment Title Genome sequencing of Cryptococcus neoformans var. grubii KN99: wildtype sample
SRA Submission ID 4040556
Submitter Ryan Zachary Friedman (mblab-admin@cgs.wustl.edu)
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name wt28
Library Layout PAIRED
Library Instrument NextSeq 500
 
SRA Experiment Id SRX2805046  (Link to NCBI )
Experiment Title Genome sequencing of Cryptococcus neoformans var. grubii KN99: wildtype sample
SRA Submission ID 4040578
Submitter Ryan Zachary Friedman (mblab-admin@cgs.wustl.edu)
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name wt03
Library Layout PAIRED
Library Instrument NextSeq 500
 
SRA Experiment Id SRX2805025  (Link to NCBI )
Experiment Title Genome sequencing of Cryptococcus neoformans var. grubii KN99: wildtype sample
SRA Submission ID 4040557
Submitter Ryan Zachary Friedman (mblab-admin@cgs.wustl.edu)
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name wt27
Library Layout PAIRED
Library Instrument NextSeq 500
 
SRA Experiment Id SRX2805047  (Link to NCBI )
Experiment Title Genome sequencing of Cryptococcus neoformans var. grubii KN99: wildtype sample
SRA Submission ID 4040579
Submitter Ryan Zachary Friedman (mblab-admin@cgs.wustl.edu)
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name wt04
Library Layout PAIRED
Library Instrument NextSeq 500
 
SRA Experiment Id SRX2805022  (Link to NCBI )
Experiment Title Genome sequencing of Cryptococcus neoformans var. grubii KN99: wildtype sample
SRA Submission ID 4040554
Submitter Ryan Zachary Friedman (mblab-admin@cgs.wustl.edu)
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name wt26
Library Layout PAIRED
Library Instrument NextSeq 500
 
SRA Experiment Id SRX2805044  (Link to NCBI )
Experiment Title Genome sequencing of Cryptococcus neoformans var. grubii KN99: wildtype sample
SRA Submission ID 4040576
Submitter Ryan Zachary Friedman (mblab-admin@cgs.wustl.edu)
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name wt05
Library Layout PAIRED
Library Instrument NextSeq 500
 
SRA Experiment Id SRX2805045  (Link to NCBI )
Experiment Title Genome sequencing of Cryptococcus neoformans var. grubii KN99: wildtype sample
SRA Submission ID 4040577
Submitter Ryan Zachary Friedman (mblab-admin@cgs.wustl.edu)
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name wt06
Library Layout PAIRED
Library Instrument NextSeq 500
 
SRA Experiment Id SRX2805023  (Link to NCBI )
Experiment Title Genome sequencing of Cryptococcus neoformans var. grubii KN99: wildtype sample
SRA Submission ID 4040555
Submitter Ryan Zachary Friedman (mblab-admin@cgs.wustl.edu)
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name wt25
Library Layout PAIRED
Library Instrument NextSeq 500
 
SRA Experiment Id SRX2805042  (Link to NCBI )
Experiment Title Genome sequencing of Cryptococcus neoformans var. grubii KN99: wildtype sample
SRA Submission ID 4040574
Submitter Ryan Zachary Friedman (mblab-admin@cgs.wustl.edu)
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name wt07
Library Layout PAIRED
Library Instrument NextSeq 500
 
SRA Experiment Id SRX2805043  (Link to NCBI )
Experiment Title Genome sequencing of Cryptococcus neoformans var. grubii KN99: wildtype sample
SRA Submission ID 4040575
Submitter Ryan Zachary Friedman (mblab-admin@cgs.wustl.edu)
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name wt08
Library Layout PAIRED
Library Instrument NextSeq 500
 
SRA Experiment Id SRX2805040  (Link to NCBI )
Experiment Title Genome sequencing of Cryptococcus neoformans var. grubii KN99: wildtype sample
SRA Submission ID 4040572
Submitter Ryan Zachary Friedman (mblab-admin@cgs.wustl.edu)
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name wt13
Library Layout PAIRED
Library Instrument NextSeq 500
 
SRA Experiment Id SRX2805041  (Link to NCBI )
Experiment Title Genome sequencing of Cryptococcus neoformans var. grubii KN99: wildtype sample
SRA Submission ID 4040573
Submitter Ryan Zachary Friedman (mblab-admin@cgs.wustl.edu)
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name wt14
Library Layout PAIRED
Library Instrument NextSeq 500
 
SRA Experiment Id SRX2805028  (Link to NCBI )
Experiment Title Genome sequencing of Cryptococcus neoformans var. grubii KN99: wildtype sample
SRA Submission ID 4040560
Submitter Ryan Zachary Friedman (mblab-admin@cgs.wustl.edu)
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name wt24
Library Layout PAIRED
Library Instrument NextSeq 500
 
SRA Experiment Id SRX2805029  (Link to NCBI )
Experiment Title Genome sequencing of Cryptococcus neoformans var. grubii KN99: wildtype sample
SRA Submission ID 4040561
Submitter Ryan Zachary Friedman (mblab-admin@cgs.wustl.edu)
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name wt23
Library Layout PAIRED
Library Instrument NextSeq 500
 
SRA Experiment Id SRX2805048  (Link to NCBI )
Experiment Title Genome sequencing of Cryptococcus neoformans var. grubii KN99: wildtype sample
SRA Submission ID 4040580
Submitter Ryan Zachary Friedman (mblab-admin@cgs.wustl.edu)
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name wt01
Library Layout PAIRED
Library Instrument NextSeq 500
 
SRA Experiment Id SRX2805026  (Link to NCBI )
Experiment Title Genome sequencing of Cryptococcus neoformans var. grubii KN99: wildtype sample
SRA Submission ID 4040558
Submitter Ryan Zachary Friedman (mblab-admin@cgs.wustl.edu)
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name wt22
Library Layout PAIRED
Library Instrument NextSeq 500
 
SRA Experiment Id SRX2805049  (Link to NCBI )
Experiment Title Genome sequencing of Cryptococcus neoformans var. grubii KN99: wildtype sample
SRA Submission ID 4040581
Submitter Ryan Zachary Friedman (mblab-admin@cgs.wustl.edu)
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name wt02
Library Layout PAIRED
Library Instrument NextSeq 500
 
SRA Experiment Id SRX2805027  (Link to NCBI )
Experiment Title Genome sequencing of Cryptococcus neoformans var. grubii KN99: wildtype sample
SRA Submission ID 4040559
Submitter Ryan Zachary Friedman (mblab-admin@cgs.wustl.edu)
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name wt21
Library Layout PAIRED
Library Instrument NextSeq 500
PROJECT COMPOSITION
Study Cryptococcus neoformans var. grubii KN99 genome sequencing and annotation
Organism Cryptococcus neoformans var. grubii KN99
Analysis Projects Cryptococcus neoformans var. grubii KN99
Number of Analysis Projects (AP)
1  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Contamination Screening Input
  
DNA Amplification Method
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina HiSeq
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0384930
Organism Name
Cryptococcus neoformans var. grubii KN99  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
EUKARYAL  
Phylogeny
FUNGI-BASIDIOMYCOTA  
Genus
Cryptococcus  
Genus Synonyms
  
Species
Cryptococcus neoformans  
Subspecies
  
Species Synonyms
  
Strain
KN99  
Strain Synonyms
  
Serovar/Cultivar
grubii  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 178876
NCBI Superkingdom
Eukaryota  
NCBI Kingdom
Fungi  
NCBI Phylum
Basidiomycota  
NCBI Class
Tremellomycetes  
NCBI Order
Tremellales  
NCBI Family
Cryptococcaceae  
NCBI Genus
Cryptococcus  
NCBI Species
Cryptococcus neoformans  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

  You are going to add the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  You are going to remove permissions for the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  Changing the SP visibility will also change visibility on the following items:

 

Do you want to continue with this visibility change?

 

 

  Checking that this Sequencing Project can be made private:

 

Do you want to continue with this visibility change?

 

 

 

 

 

  Changing the SP Sequencing Strategy will also effect these items:

 

Do you want to continue with this Sequencing Strategy change?