PROJECT INFORMATION
GOLD Project ID
Gp0236021  
Project Name
Cryptococcus neoformans var. grubii AD2-60a  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Cryptococcus neoformans var. grubii AD2-60a Genome Sequencing
NCBI BioProject ID 174542
NCBI BioProject Accession PRJNA174542
NCBI Locus Tag
  
NCBI BioSample Accession SAMN01162748
PI
Added By JGI automated process on 2017-08-31
Last Modified By JGI automated process on 2017-08-31
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Medical
Sequencing Center Broad Institute (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
Cryptococcus neoformans var. grubii AD2-60a Genome Sequencing  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX189604  (Link to NCBI )
Experiment Title Illumina whole genome shotgun sequencing of genomic DNA library 'Solexa-92858' containing sample 'Cryptococcus neoformans var. grubii AD2-60a' from individual 'Cryptococcus neoformans AD2_60a'
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Solexa-92858
Library Layout SINGLE
Library Instrument ILLUMINA_HI_SEQ_2000
Spot Length 101
 
SRA Experiment Id SRX189592  (Link to NCBI )
Experiment Title Illumina whole genome shotgun sequencing of genomic DNA paired-end library 'Pond-151799' containing sample 'Cryptococcus neoformans var. grubii AD2-60a' from individual 'Cryptococcus neoformans AD2_60a'
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Pond-151799
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
Spot Length 202
 
SRA Experiment Id SRX189368  (Link to NCBI )
Experiment Title Illumina whole genome shotgun sequencing of genomic DNA paired-end library 'Solexa-92858' containing sample 'Cryptococcus neoformans var. grubii AD2-60a' from individual 'Cryptococcus neoformans AD2_60a'
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Solexa-92858
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
Spot Length 202
PROJECT COMPOSITION
Study Cryptococcus neoformans Genome sequencing - Broad Institute
Organism Cryptococcus neoformans var. grubii AD2-60a
Analysis Projects Cryptococcus neoformans var. grubii AD2-60a
Number of Analysis Projects (AP)
1  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Draft
Sequencing Quality (MIGS-31) Level 2: High-Quality Draft
Finishing Goal
  
Contamination Screening Input
  
DNA Amplification Method
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0384885
Organism Name
Cryptococcus neoformans var. grubii AD2-60a  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
EUKARYAL  
Phylogeny
FUNGI-BASIDIOMYCOTA  
Genus
Cryptococcus  
Genus Synonyms
  
Species
Cryptococcus neoformans  
Subspecies
  
Species Synonyms
  
Strain
AD2-60a  
Strain Synonyms
  
Serovar/Cultivar
grubii  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1230059
NCBI Superkingdom
Eukaryota  
NCBI Kingdom
Fungi  
NCBI Phylum
Basidiomycota  
NCBI Class
Tremellomycetes  
NCBI Order
Tremellales  
NCBI Family
Cryptococcaceae  
NCBI Genus
Cryptococcus  
NCBI Species
Cryptococcus neoformans  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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