PROJECT INFORMATION
GOLD Project ID
Gp0217286  
Project Name
Lentinula afn. boryana ET3784 Standard Draft  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Lentinula afn. boryana ET3784 Standard Draft
NCBI BioProject ID 460928
NCBI BioProject Accession PRJNA460928
NCBI Locus Tag
DFJ43  
NCBI BioSample Accession SAMN09070708
PI David S. Hibbett
Added By JGI automated process on 2017-06-08
Last Modified By JGI automated process on 2020-10-30
Project Comments
  
Project Status
incomplete  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Genome sequencing of wood-decaying Lentinula species  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX6768194  (Link to NCBI )
Experiment Title Lentinula afn. boryana ET3784 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name BWOAT
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX6768195  (Link to NCBI )
Experiment Title Lentinula afn. boryana ET3784 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name BWOAT
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX6768196  (Link to NCBI )
Experiment Title Lentinula afn. boryana ET3784 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name BWOAT
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX6768197  (Link to NCBI )
Experiment Title Lentinula afn. boryana ET3784 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name BWOAT
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX6768198  (Link to NCBI )
Experiment Title Lentinula afn. boryana ET3784 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name BWOAT
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX6768199  (Link to NCBI )
Experiment Title Lentinula afn. boryana ET3784 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name BWOAT
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX6768200  (Link to NCBI )
Experiment Title Lentinula afn. boryana ET3784 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name BWOAT
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX6768201  (Link to NCBI )
Experiment Title Lentinula afn. boryana ET3784 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name BWOAT
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX6768202  (Link to NCBI )
Experiment Title Lentinula afn. boryana ET3784 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name BPOTS
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX6768203  (Link to NCBI )
Experiment Title Lentinula afn. boryana ET3784 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name BPOTS
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX6768204  (Link to NCBI )
Experiment Title Lentinula afn. boryana ET3784 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name BWOAT
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX6768205  (Link to NCBI )
Experiment Title Lentinula afn. boryana ET3784 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name BWOAT
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX6768206  (Link to NCBI )
Experiment Title Lentinula afn. boryana ET3784 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name BWOAT
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX6768207  (Link to NCBI )
Experiment Title Lentinula afn. boryana ET3784 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name BWOAT
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
PROJECT COMPOSITION
Study Genomic survey of white-rot, wood-decaying shiitake mushrooms
Organism Lentinula afn. boryana ET3784
Analysis Projects
  
Number of Analysis Projects (AP)
0  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Contamination Screening Input
  
DNA Amplification Method
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2500-1TB
PacBio RS II
Library Method (MIGS-28)
PacBio 6-10kb w/ Blue Pippin Size Selection, Tubes; Illumina Regular Fragment, 300bp, Tubes  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
46  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0370900
Organism Name
Lentinula afn. boryana ET3784  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
EUKARYAL  
Phylogeny
FUNGI-BASIDIOMYCOTA  
Genus
Lentinula  
Genus Synonyms
  
Species
Lentinula boryana  
Subspecies
  
Species Synonyms
  
Strain
ET3784  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 40481
NCBI Superkingdom
Eukaryota  
NCBI Kingdom
Fungi  
NCBI Phylum
Basidiomycota  
NCBI Class
Agaricomycetes  
NCBI Order
Agaricales  
NCBI Family
Omphalotaceae  
NCBI Genus
Lentinula  
NCBI Species
Lentinula boryana  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Plants  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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