PROJECT INFORMATION
GOLD Project ID
Gp0191817  
Project Name
Metatranscriptome of Mortierella humilis PMI1414_wild type & Glomeribacter phylotype 2 - PMI1414_WT_rep-2  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Metatranscriptome of Mortierella humilis PMI1414_wild type & Glomeribacter phylotype 2 - PMI1414_WT_rep-2
NCBI BioProject ID 368415
NCBI BioProject Accession PRJNA368415
NCBI Locus Tag
BZB20  
NCBI BioSample Accession SAMN06269101
PI Gregory Bonito
Added By JGI automated process on 2016-12-20
Last Modified By JGI automated process on 2020-04-05
Project Comments
  
Project Status
incomplete  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Metatranscriptomics of plant-associated fungus and its bacterial endosymbionts  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid RNA
Sequencing Strategy
Metatranscriptome  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Fungal endosymbiont bacterial communities from various locations
Biosample Metatranscriptome of Mortierella humilis PMI1414_wild type & Glomeribacter phylotype 2 - PMI1414_WT_rep-2
Analysis Projects
  
Number of Analysis Projects (AP)
0  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Contamination Screening Input
  
DNA Amplification Method
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2500-1TB
Library Method (MIGS-28)
Illumina RNASeq w/PolyA Selection, Tubes  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Metatranscriptome of Mortierella humilis PMI1414_wild type & Glomeribacter phylotype 2 - PMI1414_WT_rep-2
Other Names (alias, synonyms, short names)
  
Sample Description
Metatranscriptomics of plant-associated fungus and its bacterial endosymbionts  
SAMPLE TAXONOMY
NCBI Taxonomy ID 1670606
GOLD CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Fungi  
Ecosystem Type
Mycelium  
Ecosystem Subtype
  
Specific Ecosystem
  

 

 

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