PROJECT INFORMATION
GOLD Project ID
Gp0157072  
Project Name
Mycena olivaceomarginata CBHHK47/15 Standard Draft  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Mycena olivaceomarginata CBHHK47/15 Standard Draft
NCBI BioProject ID 369995
NCBI BioProject Accession PRJNA369995
NCBI Locus Tag
B0H14  
NCBI BioSample Accession SAMN06296011
PI Francis M. Martin
Added By JGI automated process on 2016-10-05
Last Modified By JGI automated process on 2020-11-22
Project Comments
  
Project Status
incomplete  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Genome sequencing as part of project 1KFG: Deep Sequencing of Ecologically-relevant Dikarya  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX4632792  (Link to NCBI )
Experiment Title Mycena olivaceomarginata CBHHK47/15 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name BGUAX
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX4632793  (Link to NCBI )
Experiment Title Mycena olivaceomarginata CBHHK47/15 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name BGUAX
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX4632790  (Link to NCBI )
Experiment Title Mycena olivaceomarginata CBHHK47/15 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name BGUAX
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX4632791  (Link to NCBI )
Experiment Title Mycena olivaceomarginata CBHHK47/15 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name BGUAX
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX4632796  (Link to NCBI )
Experiment Title Mycena olivaceomarginata CBHHK47/15 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name BGUAX
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX4632785  (Link to NCBI )
Experiment Title Mycena olivaceomarginata CBHHK47/15 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name BGUAX
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX4632786  (Link to NCBI )
Experiment Title Mycena olivaceomarginata CBHHK47/15 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name BGUAX
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX4632797  (Link to NCBI )
Experiment Title Mycena olivaceomarginata CBHHK47/15 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name BGUAX
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX4632794  (Link to NCBI )
Experiment Title Mycena olivaceomarginata CBHHK47/15 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name BGUAX
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX4632795  (Link to NCBI )
Experiment Title Mycena olivaceomarginata CBHHK47/15 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name BGUAX
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX4632800  (Link to NCBI )
Experiment Title Mycena olivaceomarginata CBHHK47/15 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name BGUAX
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX4632789  (Link to NCBI )
Experiment Title Mycena olivaceomarginata CBHHK47/15 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name BGUAX
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX4632801  (Link to NCBI )
Experiment Title Mycena olivaceomarginata CBHHK47/15 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name BGUAX
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX4632787  (Link to NCBI )
Experiment Title Mycena olivaceomarginata CBHHK47/15 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name BYUWG
Library Layout SINGLE
 
SRA Experiment Id SRX4632798  (Link to NCBI )
Experiment Title Mycena olivaceomarginata CBHHK47/15 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name BGUAX
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX4632799  (Link to NCBI )
Experiment Title Mycena olivaceomarginata CBHHK47/15 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name BGUAX
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX4632788  (Link to NCBI )
Experiment Title Mycena olivaceomarginata CBHHK47/15 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name BYUWG
Library Layout SINGLE
 
SRA Experiment Id SRX4632804  (Link to NCBI )
Experiment Title Mycena olivaceomarginata CBHHK47/15 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name BGUAX
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX4632802  (Link to NCBI )
Experiment Title Mycena olivaceomarginata CBHHK47/15 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name BGUAX
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX4632803  (Link to NCBI )
Experiment Title Mycena olivaceomarginata CBHHK47/15 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name BGUAX
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
PROJECT COMPOSITION
Study Sequencing of Dikarya fungi: 1000 Fungal Genomes project extension
Organism Mycena olivaceomarginata CBHHK47/15
Analysis Projects Mycena olivaceomarginata CBHHK47/15 Standard Draft
Number of Analysis Projects (AP)
1  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Contamination Screening Input
  
DNA Amplification Method
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) PacBio RS
PacBio Sequel
PacBio RS II
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0302580
Organism Name
Mycena olivaceomarginata CBHHK47/15  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
EUKARYAL  
Phylogeny
FUNGI-BASIDIOMYCOTA  
Genus
Mycena  
Genus Synonyms
  
Species
Mycena olivaceomarginata  
Subspecies
  
Species Synonyms
  
Strain
CBHHK47/15  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 230810
NCBI Superkingdom
Eukaryota  
NCBI Kingdom
Fungi  
NCBI Phylum
Basidiomycota  
NCBI Class
Agaricomycetes  
NCBI Order
Agaricales  
NCBI Family
Mycenaceae  
NCBI Genus
Mycena  
NCBI Species
Mycena olivaceomarginata  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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