PROJECT INFORMATION
GOLD Project ID
Gp0153888  
Project Name
Trametes gibbosa CIRM-BRFM 1770 Standard Draft  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Trametes gibbosa CIRM-BRFM 1770 Standard Draft
NCBI BioProject ID 331355
NCBI BioProject Accession PRJNA331355
NCBI Locus Tag
BC628  
NCBI BioSample Accession SAMN05443372
PI Eric Record
Added By JGI automated process on 2016-07-11
Last Modified By JGI automated process on 2020-09-12
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Genome sequencing to identify lignocellulolytic capabilities of members of the order Polyporales  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX2506428  (Link to NCBI )
Experiment Title Trametes gibbosa CIRM-BRFM 1770 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name BBTOC
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2506429  (Link to NCBI )
Experiment Title Trametes gibbosa CIRM-BRFM 1770 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name BBTOC
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2506430  (Link to NCBI )
Experiment Title Trametes gibbosa CIRM-BRFM 1770 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name BBTOC
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2506431  (Link to NCBI )
Experiment Title Trametes gibbosa CIRM-BRFM 1770 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name BBTOC
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2506421  (Link to NCBI )
Experiment Title Trametes gibbosa CIRM-BRFM 1770 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name BBTOC
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2506432  (Link to NCBI )
Experiment Title Trametes gibbosa CIRM-BRFM 1770 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name BBTOC
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2506422  (Link to NCBI )
Experiment Title Trametes gibbosa CIRM-BRFM 1770 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name BBTOC
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2506423  (Link to NCBI )
Experiment Title Trametes gibbosa CIRM-BRFM 1770 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name BBTOC
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2506424  (Link to NCBI )
Experiment Title Trametes gibbosa CIRM-BRFM 1770 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name BBTOC
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2506425  (Link to NCBI )
Experiment Title Trametes gibbosa CIRM-BRFM 1770 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name BBTOC
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2506426  (Link to NCBI )
Experiment Title Trametes gibbosa CIRM-BRFM 1770 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name BBTOC
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2506427  (Link to NCBI )
Experiment Title Trametes gibbosa CIRM-BRFM 1770 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name BBTOC
Library Layout SINGLE
Library Instrument PAC_BIO_RS
PROJECT COMPOSITION
Study Survey of lignocellulolytic capabilities over the order Polyporales
Organism Trametes gibbosa CIRM-BRFM 1770
Analysis Projects
  
Number of Analysis Projects (AP)
0  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Contamination Screening Input
  
DNA Amplification Method
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) PacBio RS
PacBio RS II
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0145683
Organism Name
Trametes gibbosa CIRM-BRFM 1770  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
EUKARYAL  
Phylogeny
FUNGI-BASIDIOMYCOTA  
Genus
Trametes  
Genus Synonyms
  
Species
Trametes gibbosa  
Subspecies
  
Species Synonyms
  
Strain
CIRM-BRFM 1770  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
CIRM-BRFM 1770  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 160864
NCBI Superkingdom
Eukaryota  
NCBI Kingdom
Fungi  
NCBI Phylum
Basidiomycota  
NCBI Class
Agaricomycetes  
NCBI Order
Polyporales  
NCBI Family
Polyporaceae  
NCBI Genus
Trametes  
NCBI Species
Trametes gibbosa  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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