PROJECT INFORMATION
GOLD Project ID
Gp0147167  
Project Name
Gymnopus earleae GB-263.02 Standard Draft  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Gymnopus earleae GB-263.02 Standard Draft
NCBI BioProject ID 340491
NCBI BioProject Accession PRJNA340491
NCBI Locus Tag
BGW51  
NCBI BioSample Accession SAMN05720726
PI Francis M. Martin
Added By JGI automated process on 2016-06-09
Last Modified By JGI automated process on 2020-08-29
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Genome sequencing of a forest soil isolate strain of Gymnopus earleae  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX2485729  (Link to NCBI )
Experiment Title Gymnopus earleae GB-263.02 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name BAYWT
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2485734  (Link to NCBI )
Experiment Title Gymnopus earleae GB-263.02 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name BAYWT
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2485735  (Link to NCBI )
Experiment Title Gymnopus earleae GB-263.02 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name BAYWT
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2485730  (Link to NCBI )
Experiment Title Gymnopus earleae GB-263.02 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name BAYWT
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2485731  (Link to NCBI )
Experiment Title Gymnopus earleae GB-263.02 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name BAYWT
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2485732  (Link to NCBI )
Experiment Title Gymnopus earleae GB-263.02 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name BAYWT
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2485733  (Link to NCBI )
Experiment Title Gymnopus earleae GB-263.02 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name BAYWT
Library Layout SINGLE
Library Instrument PAC_BIO_RS
PROJECT COMPOSITION
Study Genomics and transcriptomics of forest soil isolates
Organism Gymnopus earleae GB-263.02
Analysis Projects
  
Number of Analysis Projects (AP)
0  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Contamination Screening Input
  
DNA Amplification Method
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) PacBio RS
PacBio RS II
Library Method (MIGS-28)
PacBio 6-10kb w/ Blue Pippin Size Selection, Tubes  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0141762
Organism Name
Gymnopus earleae GB-263.02  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
EUKARYAL  
Phylogeny
FUNGI-BASIDIOMYCOTA  
Genus
Gymnopus  
Genus Synonyms
  
Species
Gymnopus earleae  
Subspecies
  
Species Synonyms
  
Strain
GB-263.02  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 236213
NCBI Superkingdom
Eukaryota  
NCBI Kingdom
Fungi  
NCBI Phylum
Basidiomycota  
NCBI Class
Agaricomycetes  
NCBI Order
Agaricales  
NCBI Family
Omphalotaceae  
NCBI Genus
Gymnopus  
NCBI Species
Gymnopus earleae  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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