PROJECT INFORMATION
GOLD Project ID
Gp0144028  
Project Name
Cyberlindnera fabianii JCM 3601  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Cyberlindnera fabianii
NCBI BioProject ID 313787
NCBI BioProject Accession PRJDB3616
NCBI Locus Tag
JCM3601  
NCBI BioSample Accession SAMD00028336
PI
Added By JGI automated process on 2016-05-18
Last Modified By Supratim Mukherjee on 2017-03-29
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center RIKEN (Japan)
Collaborating Institute
  
Funding Agency
  
Project Description
Genome sequencing of Cyberlindnera fabianii JCM 3601  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id DRX029288  (Link to NCBI )
Experiment Title Illumina HiSeq 2500 paired end sequencing of SAMD00028336
SRA Submission ID 2314487
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Layout PAIRED
Library Instrument Illumina HiSeq 2500
Spot Length 302
 
SRA Experiment Id DRX029413  (Link to NCBI )
Experiment Title Illumina MiSeq paired end sequencing of SAMD00028336
SRA Submission ID 2314595
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Layout PAIRED
Library Instrument Illumina MiSeq
Spot Length 602
PROJECT COMPOSITION
Study Genome sequencing of important eukaryotic microorganisms - RIKEN Center for Life Science Technologies
Organism Cyberlindnera fabianii JCM 3601
Analysis Projects Cyberlindnera fabianii JCM 3601
Number of Analysis Projects (AP)
1  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 2: High-Quality Draft
Finishing Goal
  
Contamination Screening Input
  
DNA Amplification Method
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2500
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0138971
Organism Name
Cyberlindnera fabianii JCM 3601  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
EUKARYAL  
Phylogeny
FUNGI-ASCOMYCOTA  
Genus
Cyberlindnera  
Genus Synonyms
  
Species
Cyberlindnera fabianii  
Subspecies
  
Species Synonyms
  
Strain
JCM 3601  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
JCM 3601  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 36022
NCBI Superkingdom
Eukaryota  
NCBI Kingdom
Fungi  
NCBI Phylum
Ascomycota  
NCBI Class
Saccharomycetes  
NCBI Order
Saccharomycetales  
NCBI Family
Phaffomycetaceae  
NCBI Genus
Cyberlindnera  
NCBI Species
Cyberlindnera fabianii  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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