PROJECT INFORMATION
GOLD Project ID
Gp0141907  
Project Name
Fusarium redolens MPI-CAGE-AT-0023 Standard Draft  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Fusarium redolens MPI-CAGE-AT-0023 Standard Draft
NCBI BioProject ID 347185
NCBI BioProject Accession PRJNA347185
NCBI Locus Tag
BKA55  
NCBI BioSample Accession SAMN05878234
PI Francis M. Martin
Added By JGI automated process on 2016-05-11
Last Modified By JGI automated process on 2020-11-22
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Deep Sequencing of Ecologically-relevant Dikarya species as an extension of the 1000 Fungal genomes project  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX3538923  (Link to NCBI )
Experiment Title Fusarium redolens A4 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name BOYYA
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX3538924  (Link to NCBI )
Experiment Title Fusarium redolens A4 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name BOYYA
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX3538921  (Link to NCBI )
Experiment Title Fusarium redolens A4 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name BOYYA
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX3538922  (Link to NCBI )
Experiment Title Fusarium redolens A4 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name BOYYA
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX3538919  (Link to NCBI )
Experiment Title Fusarium redolens A4 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name BOYYA
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX3538920  (Link to NCBI )
Experiment Title Fusarium redolens A4 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name BOYYA
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
PROJECT COMPOSITION
Study Sequencing of Dikarya fungi: 1000 Fungal Genomes project extension
Organism Fusarium redolens MPI-CAGE-AT-0023
Analysis Projects Fusarium redolens MPI-CAGE-AT-0023 Standard Draft
Number of Analysis Projects (AP)
1  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Contamination Screening Input
  
DNA Amplification Method
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) PacBio RS
PacBio RS II
Library Method (MIGS-28)
PacBio 6-10kb w/ Blue Pippin Size Selection, Tubes  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0136927
Organism Name
Fusarium redolens MPI-CAGE-AT-0023  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
EUKARYAL  
Phylogeny
FUNGI-ASCOMYCOTA  
Genus
Fusarium  
Genus Synonyms
  
Species
Fusarium redolens  
Subspecies
  
Species Synonyms
  
Strain
MPI-CAGE-AT-0023  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 48865
NCBI Superkingdom
Eukaryota  
NCBI Kingdom
Fungi  
NCBI Phylum
Ascomycota  
NCBI Class
Sordariomycetes  
NCBI Order
Hypocreales  
NCBI Family
Nectriaceae  
NCBI Genus
Fusarium  
NCBI Species
Fusarium redolens  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Plants  
Ecosystem Type
Rhizosphere  
Ecosystem Subtype
Soil  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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