PROJECT INFORMATION
GOLD Project ID
Gp0136991  
Project Name
Terrestrial fungal endosymbiont bacterial communities from Pennsylvania, USA - Mortierella humilis AD086 Glomeribacter phylotype 4 Resequencing  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Terrestrial fungal endosymbiont bacterial communities from Pennsylvania, USA - Mortierella humilis AD086 Glomeribacter phylotype 4 Resequencing
NCBI BioProject ID 365031
NCBI BioProject Accession PRJNA365031
NCBI Locus Tag
BYD37  
NCBI BioSample Accession SAMN06264397
PI Gregory Bonito
Added By JGI automated process on 2016-03-25
Last Modified By JGI automated process on 2020-04-05
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Metagenomics of early diverging terrestrial fungi and their bacterial endosymbionts  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid DNA
Sequencing Strategy
Metagenome  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX3000638  (Link to NCBI )
Experiment Title Mortierella humilis AD086 Glomeribacter phylotype 4 Resequencing
Exp Library Strategy WGS
Library Source METAGENOMIC
Library Selection RANDOM
Library Name AYUHZ
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2500
PROJECT COMPOSITION
Study Fungal endosymbiont bacterial communities from various locations
Biosample Terrestrial fungal endosymbiont bacterial communities from Pennsylvania, USA - Mortierella humilis AD086 Glomeribacter phylotype 4 Resequencing
Analysis Projects
  
Number of Analysis Projects (AP)
0  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Contamination Screening Input
  
DNA Amplification Method
  
Sorting Technology
  
Sequencing Comments
Resequencing, align to genomes extracted from metagenomes, also sequenced at JGI.  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2500-1TB
Illumina HiSeq 2500
Library Method (MIGS-28)
Illumina Regular Fragment, 300bp, Tubes  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Terrestrial fungal endosymbiont bacterial communities from Pennsylvania, USA - Mortierella humilis AD086 Glomeribacter phylotype 4 Resequencing
Other Names (alias, synonyms, short names)
  
Sample Description
  
SAMPLE TAXONOMY
NCBI Taxonomy ID 1297885
GOLD CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Terrestrial  
Ecosystem Type
Soil  
Ecosystem Subtype
  
Specific Ecosystem
  

 

 

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