PROJECT INFORMATION
GOLD Project ID
Gp0136983  
Project Name
Plant-associated fungal endosymbiont bacterial communities from North Carolina, USA - Mortierella humilis PMI_1414 - Glomeribacter phylotype 2 Metagenome  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Plant-associated fungal endosymbiont bacterial communities from North Carolina, USA - Mortierella humilis PMI_1414 - Glomeribacter phylotype 2 Metagenome
NCBI BioProject ID 365026
NCBI BioProject Accession PRJNA365026
NCBI Locus Tag
BYD32  
NCBI BioSample Accession SAMN06266088
PI Gregory Bonito
Added By JGI automated process on 2016-03-25
Last Modified By JGI automated process on 2020-08-29
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Metagenomics of early diverging terrestrial fungi and their bacterial endosymbionts  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid DNA
Sequencing Strategy
Metagenome  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX7203906  (Link to NCBI )
Experiment Title Mortierella humilis PMI_1414 - Glomeribacter phylotype 2 Fungal Standard Draft
Exp Library Strategy WGS
Library Source METAGENOMIC
Library Selection other
Library Name BNCYB
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX7203907  (Link to NCBI )
Experiment Title Mortierella humilis PMI_1414 - Glomeribacter phylotype 2 Fungal Standard Draft
Exp Library Strategy WGS
Library Source METAGENOMIC
Library Selection other
Library Name BNCYB
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX7203908  (Link to NCBI )
Experiment Title Mortierella humilis PMI_1414 - Glomeribacter phylotype 2 Fungal Standard Draft
Exp Library Strategy WGS
Library Source METAGENOMIC
Library Selection other
Library Name BNCYB
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX7203901  (Link to NCBI )
Experiment Title Mortierella humilis PMI_1414 - Glomeribacter phylotype 2 Fungal Standard Draft
Exp Library Strategy WGS
Library Source METAGENOMIC
Library Selection other
Library Name BNCYB
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX7203902  (Link to NCBI )
Experiment Title Mortierella humilis PMI_1414 - Glomeribacter phylotype 2 Fungal Standard Draft
Exp Library Strategy WGS
Library Source METAGENOMIC
Library Selection other
Library Name BNCYB
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX7203903  (Link to NCBI )
Experiment Title Mortierella humilis PMI_1414 - Glomeribacter phylotype 2 Fungal Standard Draft
Exp Library Strategy WGS
Library Source METAGENOMIC
Library Selection other
Library Name BNCYB
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX7203904  (Link to NCBI )
Experiment Title Mortierella humilis PMI_1414 - Glomeribacter phylotype 2 Fungal Standard Draft
Exp Library Strategy WGS
Library Source METAGENOMIC
Library Selection other
Library Name BNCYB
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX7203905  (Link to NCBI )
Experiment Title Mortierella humilis PMI_1414 - Glomeribacter phylotype 2 Fungal Standard Draft
Exp Library Strategy WGS
Library Source METAGENOMIC
Library Selection other
Library Name BNCYB
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
PROJECT COMPOSITION
Study Fungal endosymbiont bacterial communities from various locations
Biosample Plant-associated fungal endosymbiont bacterial communities from North Carolina, USA - Mortierella humilis PMI_1414 - Glomeribacter phylotype 2 Metagenome
Analysis Projects Plant-associated fungal endosymbiont bacterial communities from North Carolina, USA - Mortierella humilis PMI_1414 - Glomeribacter phylotype 2 Metagenome
Number of Analysis Projects (AP)
1  
Number of Derived Analyis Projects (DAP)
1  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Contamination Screening Input
  
DNA Amplification Method
  
Sorting Technology
  
Sequencing Comments
Goal is to extract fungal & endobacterium genomes and annotate. We are also sequencing RNA.  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) PacBio RS
Illumina HiSeq 2500-1TB
PacBio RS II
Library Method (MIGS-28)
Illumina Regular Fragment, 300bp, Tubes; PacBio 6-10kb w/ Blue Pippin Size Selection, Tubes  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Plant-associated fungal endosymbiont bacterial communities from North Carolina, USA - Mortierella humilis PMI_1414 - Glomeribacter phylotype 2 Metagenome
Other Names (alias, synonyms, short names)
  
Sample Description
  
SAMPLE TAXONOMY
NCBI Taxonomy ID 1297885
GOLD CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Fungi  
Ecosystem Type
Mycorrhiza  
Ecosystem Subtype
  
Specific Ecosystem
  

 

 

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