PROJECT INFORMATION
GOLD Project ID
Gp0115332  
Project Name
Ustilaginoidea virens IPU010  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Ustilaginoidea virens strain IPU010
NCBI BioProject ID 279060
NCBI BioProject Accession PRJDB3318
NCBI Locus Tag
  
NCBI BioSample Accession SAMD00024747
PI Myco Umemura
Added By Nikos Kyrpides on 2015-05-27
Last Modified By Hema Katta on 2017-11-17
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center National Institute of Advanced Industrial Science and Technology (AIST)
Collaborating Institute
  
Funding Agency
  
Project Description
Ustilaginoidea virens is a rice pathogenic fungus, causing the false smut disease that seriously damages the yield and quality of the grain  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Genome announcements Genome Sequence of Ustilaginoidea virens IPU010, a Rice Pathogenic Fungus Causing False Smut.

Other Publications
  
SRA Experiment
 
SRA Experiment Id DRX114789  (Link to NCBI )
Experiment Title Uvirens_IPU010_PacBio
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection size fractionation
Library Name Uvirens_IPU010_PacBio
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
PROJECT COMPOSITION
Study Ustilaginoidea virens IPU010
Organism Ustilaginoidea virens IPU010
Analysis Projects Ustilaginoidea virens IPU010
Number of Analysis Projects (AP)
1  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Contamination Screening Input
  
DNA Amplification Method
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina MiSeq
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0112882
Organism Name
Ustilaginoidea virens IPU010  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
EUKARYAL  
Phylogeny
FUNGI-ASCOMYCOTA  
Genus
Ustilaginoidea  
Genus Synonyms
  
Species
Ustilaginoidea virens  
Subspecies
  
Species Synonyms
  
Strain
IPU010  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1159556
NCBI Superkingdom
Eukaryota  
NCBI Kingdom
Fungi  
NCBI Phylum
Ascomycota  
NCBI Class
Sordariomycetes  
NCBI Order
Hypocreales  
NCBI Family
Clavicipitaceae  
NCBI Genus
Ustilaginoidea  
NCBI Species
Ustilaginoidea virens  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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