PROJECT INFORMATION
GOLD Project ID
Gp0113708  
Project Name
Gymnopilus junonius AH 44721 Standard Draft  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Gymnopilus junonius AH 44721 Standard Draft
NCBI BioProject ID 410305
NCBI BioProject Accession PRJNA410305
NCBI Locus Tag
CPB84  
NCBI BioSample Accession SAMN07687479
PI Jose Maria Barrasa
Added By JGI automated process on 2015-04-20
Last Modified By JGI automated process on 2020-08-29
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Study of the lignocellulolytic machinery in saprobic wood and leaf litter degrading Agaricales  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX3299880  (Link to NCBI )
Experiment Title Gymnopilus junonius AH 44721 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name BNNCT
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX3299881  (Link to NCBI )
Experiment Title Gymnopilus junonius AH 44721 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name BNNCT
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX3299860  (Link to NCBI )
Experiment Title Gymnopilus junonius AH 44721 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name BNNCS
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX3299882  (Link to NCBI )
Experiment Title Gymnopilus junonius AH 44721 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name AZNYT
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX3299861  (Link to NCBI )
Experiment Title Gymnopilus junonius AH 44721 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name BNNCU
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX3299883  (Link to NCBI )
Experiment Title Gymnopilus junonius AH 44721 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name BNNCP
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX3299884  (Link to NCBI )
Experiment Title Gymnopilus junonius AH 44721 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name BNNCP
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX3299862  (Link to NCBI )
Experiment Title Gymnopilus junonius AH 44721 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name BNNCU
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX3299863  (Link to NCBI )
Experiment Title Gymnopilus junonius AH 44721 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name BNNCU
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX3299885  (Link to NCBI )
Experiment Title Gymnopilus junonius AH 44721 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name BNNCP
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX3299886  (Link to NCBI )
Experiment Title Gymnopilus junonius AH 44721 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name BNCXT
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX3299864  (Link to NCBI )
Experiment Title Gymnopilus junonius AH 44721 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name BNNCU
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX3299887  (Link to NCBI )
Experiment Title Gymnopilus junonius AH 44721 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name BNCXT
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX3299865  (Link to NCBI )
Experiment Title Gymnopilus junonius AH 44721 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name BNNCU
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX3299899  (Link to NCBI )
Experiment Title Gymnopilus junonius AH 44721 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name AUBZP
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX3299877  (Link to NCBI )
Experiment Title Gymnopilus junonius AH 44721 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name AZNYT
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX3299878  (Link to NCBI )
Experiment Title Gymnopilus junonius AH 44721 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name BNNCS
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX3299857  (Link to NCBI )
Experiment Title Gymnopilus junonius AH 44721 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name BNCXT
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX3299879  (Link to NCBI )
Experiment Title Gymnopilus junonius AH 44721 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name BNNCS
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX3299858  (Link to NCBI )
Experiment Title Gymnopilus junonius AH 44721 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name BNCXT
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX3299859  (Link to NCBI )
Experiment Title Gymnopilus junonius AH 44721 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name AZNYT
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX3299890  (Link to NCBI )
Experiment Title Gymnopilus junonius AH 44721 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name BNNCT
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX3299891  (Link to NCBI )
Experiment Title Gymnopilus junonius AH 44721 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name BNNCT
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX3299870  (Link to NCBI )
Experiment Title Gymnopilus junonius AH 44721 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name BNNCP
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX3299892  (Link to NCBI )
Experiment Title Gymnopilus junonius AH 44721 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name BNNCT
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX3299893  (Link to NCBI )
Experiment Title Gymnopilus junonius AH 44721 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name APGPP
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2500
 
SRA Experiment Id SRX3299871  (Link to NCBI )
Experiment Title Gymnopilus junonius AH 44721 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name BNNCP
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX3299894  (Link to NCBI )
Experiment Title Gymnopilus junonius AH 44721 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name BNNCU
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX3299872  (Link to NCBI )
Experiment Title Gymnopilus junonius AH 44721 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name AZNYT
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX3299895  (Link to NCBI )
Experiment Title Gymnopilus junonius AH 44721 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name BNNCU
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX3299873  (Link to NCBI )
Experiment Title Gymnopilus junonius AH 44721 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name BNNCT
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX3299896  (Link to NCBI )
Experiment Title Gymnopilus junonius AH 44721 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name BNNCU
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX3299874  (Link to NCBI )
Experiment Title Gymnopilus junonius AH 44721 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name AZNYT
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX3299897  (Link to NCBI )
Experiment Title Gymnopilus junonius AH 44721 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection size fractionation
Library Name APSXT
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2500
 
SRA Experiment Id SRX3299875  (Link to NCBI )
Experiment Title Gymnopilus junonius AH 44721 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name AZNYT
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX3299898  (Link to NCBI )
Experiment Title Gymnopilus junonius AH 44721 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name AZNYT
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX3299876  (Link to NCBI )
Experiment Title Gymnopilus junonius AH 44721 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name BNNCT
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX3299866  (Link to NCBI )
Experiment Title Gymnopilus junonius AH 44721 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name BNCXT
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX3299888  (Link to NCBI )
Experiment Title Gymnopilus junonius AH 44721 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name BNCXT
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX3299867  (Link to NCBI )
Experiment Title Gymnopilus junonius AH 44721 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name BNCXT
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX3299889  (Link to NCBI )
Experiment Title Gymnopilus junonius AH 44721 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name BNCXT
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX3299900  (Link to NCBI )
Experiment Title Gymnopilus junonius AH 44721 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name AUBZP
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX3299868  (Link to NCBI )
Experiment Title Gymnopilus junonius AH 44721 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name BNCXT
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX3299901  (Link to NCBI )
Experiment Title Gymnopilus junonius AH 44721 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name AUBZP
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX3299869  (Link to NCBI )
Experiment Title Gymnopilus junonius AH 44721 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name BNNCS
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX3299902  (Link to NCBI )
Experiment Title Gymnopilus junonius AH 44721 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name BNNCS
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX3299903  (Link to NCBI )
Experiment Title Gymnopilus junonius AH 44721 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name BNNCP
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
PROJECT COMPOSITION
Study Study of the lignocellulolytic machinery in saprobic wood and leaf litter degrading Agaricales
Organism Gymnopilus junonius AH 44721
Analysis Projects
  
Number of Analysis Projects (AP)
0  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Contamination Screening Input
  
DNA Amplification Method
  
Sequencing Comments
Samples from this proposal will be sent in 3 batches (2014-2015), annotation from 4 species will be used as reference for gene expression from same proposal.  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) PacBio RS
Illumina HiSeq 2500-1TB
PacBio RS II
Library Method (MIGS-28)
Illumina Regular Fragment, 300bp, Tubes; PacBio 6-10kb w/ Blue Pippin Size Selection, Tubes; Production RnD, Tubes  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0111649
Organism Name
Gymnopilus junonius AH 44721  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
EUKARYAL  
Phylogeny
FUNGI-BASIDIOMYCOTA  
Genus
Gymnopilus  
Genus Synonyms
  
Species
Gymnopilus junonius  
Subspecies
  
Species Synonyms
  
Strain
AH 44721  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 109634
NCBI Superkingdom
Eukaryota  
NCBI Kingdom
Fungi  
NCBI Phylum
Basidiomycota  
NCBI Class
Agaricomycetes  
NCBI Order
Agaricales  
NCBI Family
Cortinariaceae  
NCBI Genus
Gymnopilus  
NCBI Species
Gymnopilus junonius  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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