PROJECT INFORMATION
GOLD Project ID
Gp0102211  
Project Name
Arthonia rubrocincta Arru_GBP0182  
Other Names
  
Legacy ER Project ID
76984  
Legacy GOLD ID
Gi0076984  
NCBI BioProject Name Arthonia rubrocincta strain:Arru_GBP0182
NCBI BioProject ID 256244
NCBI BioProject Accession PRJNA256244
NCBI Locus Tag
  
NCBI BioSample Accession
PI
Added By JGI automated process on 2014-08-08
Last Modified By
Project Comments
  
Project Status
incomplete  
Project Relevance Evolution
Sequencing Center Duke University (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
A lichen is a symbiotic association of a fungus and a photosynthesizing partner, such as a green algae or cyanobacterium. The symbiosis is usually obligate for the fungus. The goal of this study was to generate genome information for phylogenetic analysis from the cultured mycobionts (lichenizing fungi) and lichen thalli spanning the diversity of lichenized groups in the classes Lecanoromycetes, Eurotiomycetes, Dothidiomycetes, and Arthoniomycetes. Arthonia rubrocincta is a lichenizing fungus in the class Arthoniomycetes.  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Genome sequencing of lichenizing fungi to assess gene loss - Duke University
Organism Arthonia rubrocincta Arru_GBP0182
Analysis Projects
  
Number of Analysis Projects (AP)
0  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status In progress
Sequencing Quality (MIGS-31)
Finishing Goal
  
Contamination Screening Input
  
DNA Amplification Method
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0102211
Organism Name
Arthonia rubrocincta Arru_GBP0182  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
EUKARYAL  
Phylogeny
FUNGI-ASCOMYCOTA  
Genus
Arthonia  
Genus Synonyms
  
Species
Arthonia rubrocincta  
Subspecies
  
Species Synonyms
  
Strain
Arru_GBP0182  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 714574
NCBI Superkingdom
Eukaryota  
NCBI Kingdom
Fungi  
NCBI Phylum
Ascomycota  
NCBI Class
Arthoniomycetes  
NCBI Order
Arthoniales  
NCBI Family
Arthoniaceae  
NCBI Genus
Arthonia  
NCBI Species
Arthonia rubrocincta  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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