PROJECT INFORMATION
GOLD Project ID
Gp0040455  
Project Name
Aspergillus campestris IBT 28561  
Other Names
  
Legacy ER Project ID
46482  
Legacy GOLD ID
Gi0046482  
NCBI BioProject Name Aspergillus campestris IBT 28561
NCBI BioProject ID 217206
NCBI BioProject Accession PRJNA217206
NCBI Locus Tag
P168  
NCBI BioSample Accession SAMN02744593
PI Scott E. Baker
Added By JGI automated process on 2013-05-08
Last Modified By JGI automated process on 2018-10-08
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Aspergillus whole-genus sequencing  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications Proceedings of the National Academy of Sciences of the United States of America 115(4):E753-E761 species.

Other Publications Studies in mycology Polyphasic taxonomy of Aspergillus section Candidi based on molecular, morphological and physiological data.

Phytochemistry 53(5):581-6 An amendment of Aspergillus section Candidi based on chemotaxonomical evidence.

SRA Experiment
 
SRA Experiment Id SRX1911550  (Link to NCBI )
Experiment Title Aspergillus campestris IBT 28561 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name OTUT
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX1911552  (Link to NCBI )
Experiment Title Aspergillus campestris IBT 28561 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name OTUT
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX1911551  (Link to NCBI )
Experiment Title Aspergillus campestris IBT 28561 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name OTUT
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX1911543  (Link to NCBI )
Experiment Title Aspergillus campestris IBT 28561 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name OTUT
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX1911554  (Link to NCBI )
Experiment Title Aspergillus campestris IBT 28561 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name OTUT
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX1911542  (Link to NCBI )
Experiment Title Aspergillus campestris IBT 28561 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name OTUT
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX1911553  (Link to NCBI )
Experiment Title Aspergillus campestris IBT 28561 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name OTUT
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX1911545  (Link to NCBI )
Experiment Title Aspergillus campestris IBT 28561 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name OTUT
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX1911556  (Link to NCBI )
Experiment Title Aspergillus campestris IBT 28561 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name NWNU
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
 
SRA Experiment Id SRX1911544  (Link to NCBI )
Experiment Title Aspergillus campestris IBT 28561 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name OTUT
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX1911555  (Link to NCBI )
Experiment Title Aspergillus campestris IBT 28561 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name OTUT
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX1911547  (Link to NCBI )
Experiment Title Aspergillus campestris IBT 28561 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name OTUT
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX1911546  (Link to NCBI )
Experiment Title Aspergillus campestris IBT 28561 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name OTUT
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX1911549  (Link to NCBI )
Experiment Title Aspergillus campestris IBT 28561 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name OTUT
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX1911548  (Link to NCBI )
Experiment Title Aspergillus campestris IBT 28561 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name OTUT
Library Layout SINGLE
Library Instrument PAC_BIO_RS
PROJECT COMPOSITION
Study Genome and Transcriptome sequencing of members of the genus Aspergillus
Organism Aspergillus campestris IBT 28561
Analysis Projects Aspergillus campestris IBT 28561
Number of Analysis Projects (AP)
1  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Contamination Screening Input
  
DNA Amplification Method
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) PacBio RS
Illumina HiSeq 2500
Illumina HiSeq 2000
PacBio RS II
Library Method (MIGS-28)
Illumina Regular Fragment, 300bp, Tubes  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0040455
Organism Name
Aspergillus campestris IBT 28561  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
EUKARYAL  
Phylogeny
FUNGI-ASCOMYCOTA  
Genus
Aspergillus  
Genus Synonyms
  
Species
Aspergillus campestris  
Subspecies
  
Species Synonyms
  
Strain
IBT 28561  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
CBS 348.81  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1392248
NCBI Superkingdom
Eukaryota  
NCBI Kingdom
Fungi  
NCBI Phylum
Ascomycota  
NCBI Class
Eurotiomycetes  
NCBI Order
Eurotiales  
NCBI Family
Aspergillaceae  
NCBI Genus
Aspergillus  
NCBI Species
Aspergillus campestris  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Terrestrial  
Ecosystem Type
Soil  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Grasslands  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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