PROJECT INFORMATION
GOLD Project ID
Gp0038875  
Project Name
Flammulina velutipes KACC42780  
Other Names
  
Legacy ER Project ID
44545  
Legacy GOLD ID
Gi0044545  
NCBI BioProject Name Flammulina velutipes KACC42780
NCBI BioProject ID 191921
NCBI BioProject Accession PRJNA191921
NCBI Locus Tag
  
NCBI BioSample Accession SAMN01940701
PI
Added By JGI automated process on 2013-04-02
Last Modified By JGI automated process on 2016-06-13
Project Comments
  
Project Status
Complete and Published  
Project Relevance Agricultural
Sequencing Center Konkuk University
Collaborating Institute
  
Funding Agency
  
Project Description
  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX247922  (Link to NCBI )
Experiment Title 454 GS FLX Titanium sequencing of Flammulina velutipes KACC42780 genome
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Layout SINGLE
Library Instrument 454 GS FLX Titanium
Spot Length 0
 
SRA Experiment Id SRX247921  (Link to NCBI )
Experiment Title 454 GS FLX Titanium sequencing of Flammulina velutipes KACC42780 genome
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Layout SINGLE
Library Instrument 454 GS FLX Titanium
Spot Length 0
 
SRA Experiment Id SRX247924  (Link to NCBI )
Experiment Title 454 GS FLX Titanium sequencing of Flammulina velutipes KACC42780 genome
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Layout PAIRED
Library Instrument 454 GS FLX Titanium
Spot Length 0
 
SRA Experiment Id SRX247923  (Link to NCBI )
Experiment Title 454 GS FLX Titanium sequencing of Flammulina velutipes KACC42780 genome
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Layout SINGLE
Library Instrument 454 GS FLX Titanium
Spot Length 0
 
SRA Experiment Id SRX247920  (Link to NCBI )
Experiment Title 454 GS FLX Titanium sequencing of Flammulina velutipes KACC42780 genome
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Layout SINGLE
Library Instrument 454 GS FLX Titanium
Spot Length 0
 
SRA Experiment Id SRX247919  (Link to NCBI )
Experiment Title 454 GS FLX Titanium sequencing of Flammulina velutipes KACC42780 genome
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Layout SINGLE
Library Instrument 454 GS FLX Titanium
Spot Length 0
 
SRA Experiment Id SRX247918  (Link to NCBI )
Experiment Title 454 GS FLX Titanium sequencing of Flammulina velutipes KACC42780 genome
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Layout SINGLE
Library Instrument 454 GS FLX Titanium
Spot Length 0
 
SRA Experiment Id SRX247926  (Link to NCBI )
Experiment Title 454 GS FLX Titanium sequencing of Flammulina velutipes KACC42780 genome BACs
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Layout SINGLE
Library Instrument 454 GS FLX Titanium
Spot Length 0
 
SRA Experiment Id SRX247925  (Link to NCBI )
Experiment Title 454 GS FLX Titanium sequencing of Flammulina velutipes KACC42780 genome
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Layout PAIRED
Library Instrument 454 GS FLX Titanium
Spot Length 0
 
SRA Experiment Id SRX247917  (Link to NCBI )
Experiment Title 454 GS FLX Titanium sequencing of Flammulina velutipes KACC42780 genome
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Layout SINGLE
Library Instrument 454 GS FLX Titanium
Spot Length 0
PROJECT COMPOSITION
Study Flammulina velutipes KACC42780 Genome sequencing
Organism Flammulina velutipes KACC42780
Analysis Projects Flammulina velutipes KACC42780
Number of Analysis Projects (AP)
1  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Contamination Screening Input
  
DNA Amplification Method
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) 454
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0038875
Organism Name
Flammulina velutipes KACC42780  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
EUKARYAL  
Phylogeny
FUNGI-BASIDIOMYCOTA  
Genus
Flammulina  
Genus Synonyms
  
Species
Flammulina velutipes  
Subspecies
  
Species Synonyms
  
Strain
KACC42780  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1300067
NCBI Superkingdom
Eukaryota  
NCBI Kingdom
Fungi  
NCBI Phylum
Basidiomycota  
NCBI Class
Agaricomycetes  
NCBI Order
Agaricales  
NCBI Family
Physalacriaceae  
NCBI Genus
Flammulina  
NCBI Species
Flammulina velutipes  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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