PROJECT INFORMATION
GOLD Project ID
Gp0018721  
Project Name
Calocera viscosa TUFC12733  
Other Names
  
Legacy ER Project ID
40639  
Legacy GOLD ID
Gi38822  
NCBI BioProject Name Calocera viscosa TUFC12733
NCBI BioProject ID 200620
NCBI BioProject Accession PRJNA200620
NCBI Locus Tag
L229  
NCBI BioSample Accession SAMN02745652
PI David S. Hibbett
Added By JGI automated process on 2013-02-08
Last Modified By JGI automated process on 2020-11-23
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Community proposal to sequence a diverse assemblage of saprotrophic Basidiomycota (Agaricomycotina)  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications Molecular biology and evolution 33(4):959-70 Comparative Genomics of Early-Diverging Mushroom-Forming Fungi Provides Insights into the Origins of Lignocellulose Decay Capabilities.

Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX872250  (Link to NCBI )
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name PWWP
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
 
SRA Experiment Id SRX872251  (Link to NCBI )
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection size fractionation
Library Name PNWU
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
PROJECT COMPOSITION
Study Community proposal to sequence a diverse assemblage of saprotrophic Basidiomycota (Agaricomycotina)
Organism Calocera viscosa TUFC12733
Analysis Projects Calocera viscosa TUFC12733
Calocera viscosa TUFC12733
Number of Analysis Projects (AP)
2  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Contamination Screening Input
  
DNA Amplification Method
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina
Illumina HiSeq 2500
Illumina HiSeq 2000
Library Method (MIGS-28)
Illumina Regular Fragment, 300bp, Tubes  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0014269
Organism Name
Calocera viscosa TUFC12733  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
EUKARYAL  
Phylogeny
FUNGI-BASIDIOMYCOTA  
Genus
Calocera  
Genus Synonyms
  
Species
Calocera viscosa  
Subspecies
  
Species Synonyms
  
Strain
TUFC12733  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1330018
NCBI Superkingdom
Eukaryota  
NCBI Kingdom
Fungi  
NCBI Phylum
Basidiomycota  
NCBI Class
Dacrymycetes  
NCBI Order
Dacrymycetales  
NCBI Family
Dacrymycetaceae  
NCBI Genus
Calocera  
NCBI Species
Calocera viscosa  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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