PROJECT NAME
GOLD Project ID
Gp0002880  
Project Name
Oryza sativa japonica c.v. Nipponbare  
Other Names
  
Legacy ER Project ID
12795  
Legacy GOLD ID
Gi02164  
NCBI BioProject Name Oryza sativa (japonica cultivar-group)
NCBI BioProject ID 13139
NCBI BioProject Accession
PRJNA13139  
NCBI Locus Tag
OSJ  
NCBI BioSample Accession
  
PI Yu J
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Jyothi Mallajosyula on 2014-10-31
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy Whole Genome Sequencing
PROJECT INFORMATION
Project Status
incomplete  
Project Relevance
  
Sequencing Center Beijing Genomics Institute (BGI) (China)
Collaborating Institute
  
Funding Agency
  
Project Description
Whole genome shotgun sequencing project of Oryza sativa ssp japonica genome by Chinese Academy of Sciences  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information Entrez
Taxonomy
Publication
Database
  
Genome Publications
  
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Oryza sativa ssp. japonica c.v. Nipponbare
Biosamples Oryza sativa japonica c.v. Nipponbare
Analysis Projects
  
SEQUENCING INFORMATION
Sequencing Status Draft
Sequencing Quality
  
Finishing Goal
  
Sequencing Comments
  
Low Quality Genome
No  
Sequencing Technology Sanger
Library Method
  
Number Of Reads
  
Read Size
  
Sequencing Depth
  
Vector
  
GC Percent
  
Chromosome Count
12  
Plasmid Count
0  
ORGANISM NAME
Organism Name Oryza sativa japonica c.v. Nipponbare
Other names (alias, synonyms, short names, common names)
  
Organism Domain
EUKARYAL  
Phylogeny
PLANTS-STREPTOPHYTA  
Genus
Oryza  
Genus Synonyms
  
Species
Oryza sativa  
Species Synonyms
  
Strain
  
Strain Synonyms
  
Serovar-Biovar
Nipponbare  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 39947
NCBI Kingdom
Eukaryota  
NCBI Phylum
Streptophyta  
NCBI Class
Liliopsida  
NCBI Order
Poales  
NCBI Family
Poaceae  
NCBI Genus
Oryza  
NCBI Species
Oryza sativa  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types